PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895621.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family LBD
Protein Properties Length: 252aa    MW: 26803.1 Da    PI: 8.2204
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.93.7e-2941081100
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +P++G+vg+++++++  +q+
  XP_015895621.1   4 SCNGCRVLRKGCSNGCSIRPCLqwiksPDSQAHATLFLAKFYGRAGLLNLINAGPQHLRPAIFKSLLYEACGRIVNPINGSVGLLWSGNWTKCQA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallkee 100
                     +++++l++++
  XP_015895621.1  99 AVDAVLAGSP 108
                     **99988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2563109IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-234103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSNGCS IRPCLQWIKS PDSQAHATLF LAKFYGRAGL LNLINAGPQH  60
LRPAIFKSLL YEACGRIVNP INGSVGLLWS GNWTKCQAAV DAVLAGSPID GTDATASNRS  120
LSLNACDIRH VAREPSWAAS DHNLNQVNNR SRFKRTVSRP KTQFGLAAGS NSVDSDGFLT  180
PGLTRIGVDE FSGLTGHDSL ANGNSGEEES MFSVETVEAS SLRRAAQQDS APNLGSQAGD  240
GEVRLELTLG LA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895621.10.0PREDICTED: LOB domain-containing protein 42-like
SwissprotQ9CA305e-74LBD42_ARATH; LOB domain-containing protein 42
TrEMBLW9RM274e-94W9RM27_9R
STRINGVIT_01s0011g03540.t017e-84(Vitis vinifera)
STRINGVIT_14s0006g02950.t011e-83(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.13e-75LOB domain-containing protein 42